PClean: Bayesian Data Cleaning at Scale with Domain-Specific Probabilistic Programming

Data cleaning is naturally framed as probabilistic inference in a generative model, combining a prior distribution over ground-truth databases with a likelihood that models the noisy channel by which the data are filtered, corrupted, and joined to yield incomplete, dirty, and denormalized datasets. Based on this view, we present PClean, a unified generative modeling architecture for cleaning and normalizing dirty data in diverse domains. Given an unclean dataset and a probabilistic program encoding relevant domain knowledge, PClean learns a structured representation of the data as a relational database of interrelated objects, and uses this latent structure to impute missing values, identify duplicates, detect errors, and propose corrections in the original data table. PClean makes three modeling and inference contributions: (i) a domain-general non-parametric generative model of relational data, for inferring latent objects and their network of latent connections; (ii) a domain-specific probabilistic programming language, for encoding domain knowledge specific to each dataset being cleaned; and (iii) a domain-general inference engine that adapts to each PClean program by constructing data-driven proposals used in sequential Monte Carlo and particle Gibbs. We show empirically that short (< 50-line) PClean programs deliver higher accuracy than state-of-the-art data cleaning systems based on machine learning and weighted logic; that PClean's inference algorithm is faster than generic particle Gibbs inference for probabilistic programs; and that PClean scales to large real-world datasets with millions of rows.Comment: Added references; revised abstrac

ADEV: Sound Automatic Differentiation of Expected Values of Probabilistic Programs

Optimizing the expected values of probabilistic processes is a central problem in computer science and its applications, arising in fields ranging from artificial intelligence to operations research to statistical computing. Unfortunately, automatic differentiation techniques developed for deterministic programs do not in general compute the correct gradients needed for widely used solutions based on gradient-based optimization. In this paper, we present ADEV, an extension to forward-mode AD that correctly differentiates the expectations of probabilistic processes represented as programs that make random choices. Our algorithm is a source-to-source program transformation on an expressive, higher-order language for probabilistic computation, with both discrete and continuous probability distributions. The result of our transformation is a new probabilistic program, whose expected return value is the derivative of the original program's expectation. This output program can be run to generate unbiased Monte Carlo estimates of the desired gradient, which can then be used within the inner loop of stochastic gradient descent. We prove ADEV correct using logical relations over the denotations of the source and target probabilistic programs. Because it modularly extends forward-mode AD, our algorithm lends itself to a concise implementation strategy, which we exploit to develop a prototype in just a few dozen lines of Haskell (https://github.com/probcomp/adev).Comment: to appear at POPL 202

From Word Models to World Models: Translating from Natural Language to the Probabilistic Language of Thought

How does language inform our downstream thinking? In particular, how do humans make meaning from language -- and how can we leverage a theory of linguistic meaning to build machines that think in more human-like ways? In this paper, we propose \textit{rational meaning construction}, a computational framework for language-informed thinking that combines neural models of language with probabilistic models for rational inference. We frame linguistic meaning as a context-sensitive mapping from natural language into a \textit{probabilistic language of thought} (PLoT) -- a general-purpose symbolic substrate for probabilistic, generative world modeling. Our architecture integrates two powerful computational tools that have not previously come together: we model thinking with \textit{probabilistic programs}, an expressive representation for flexible commonsense reasoning; and we model meaning construction with \textit{large language models} (LLMs), which support broad-coverage translation from natural language utterances to code expressions in a probabilistic programming language. We illustrate our framework in action through examples covering four core domains from cognitive science: probabilistic reasoning, logical and relational reasoning, visual and physical reasoning, and social reasoning about agents and their plans. In each, we show that LLMs can generate context-sensitive translations that capture pragmatically-appropriate linguistic meanings, while Bayesian inference with the generated programs supports coherent and robust commonsense reasoning. We extend our framework to integrate cognitively-motivated symbolic modules to provide a unified commonsense thinking interface from language. Finally, we explore how language can drive the construction of world models themselves

From START to FINISH : the influence of osmotic stress on the cell cycle

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